PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G00640.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1130aa    MW: 123014 Da    PI: 6.5716
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G00640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.8e-061041161426
                      --TTTTT-SS-SS CS
          zf-CCCH  14 tCkyGdrCkFaHg 26 
                       CkyGd+C+F+H+
  ONIVA04G00640.1 104 SCKYGDSCRFSHD 116
                      7***********6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.5387118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.707.2E-74329572IPR013785Aldolase-type TIM barrel
SuperFamilySSF513953.3E-64333644No hitNo description
CDDcd028011.25E-91333568No hitNo description
PfamPF012071.5E-53336569IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360417435IPR018517tRNA-dihydrouridine synthase, conserved site
Gene3DG3DSA:3.90.1300.104.7E-897061119IPR023631Amidase signature domain
PfamPF014258.6E-617191110IPR023631Amidase signature domain
SuperFamilySSF753041.7E-867221116IPR023631Amidase signature domain
PROSITE patternPS005710808839IPR020556Amidase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002943Biological ProcesstRNA dihydrouridine synthesis
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 1130 aa     Download sequence    Send to blast
MAAAAAAAAA APPADPPDSS PAASSPPRPS PEELVARAVA PVKPAFLRPP PVRDAPKDEG  60
KANDGGAVVA EKKSKRQLKR ERKQEQKSSS HLCIEVGKSG NVSSCKYGDS CRFSHDIDAY  120
LAQKPADLEG TCPFTNLDQL CPYGLTCRFL GTHKDIHAAS GNLSEKHEIN ALNKDIQKLL  180
WKNKYKFPKA SAQIKLLGLK EVIKSKPDAA NDDKKVNHDN LDGNDDENKE PLCNPPVNAE  240
CDSTLCEELD RSEGEPLIDN SIPCVEPRPT KKSKVESDEI DKHGAGTLNT NTESEDPNLS  300
NGLEPSNNAS SCRTDLITTP HLREKKIIDF REKLYLAPLT TVGNLPFRRL CKTLGADITC  360
GEMAMCTNLL QGQASEWALL RRHSSEDLFG VQICGAYPDT VARTVELVDN ECSIDFIDIN  420
MGCPIDIVVN KGAGSSLLTK PMRIKSIVQA ASTVTEKPLT VKVRTAFFEG RNRADSIVSD  480
IYDWGASAIT VHGRSRQQRY SKLADWDYIY QCAQKAPDQL HVVGNGDVFS FTDWNKHVSG  540
CSKISTCMIA RGALIKPWIF TEVKEQRHWD ITSGERFNIL KDFVSFGLEH WGSDSKGVET  600
TRYFLLEWLS YTCRYIPVGL LDVIPQRLNW RPPSYCGRDD LETLMISDSA ADWIRISEML  660
LGKVPEGHTV PIFCCFANWA SICRRRAAQA QPLCRLNKLS RGGGVEDQRF VLPPPPPPSS  720
QQLPLHGLTF AIKDIFDIAG RVTGFGNPDW ARTHAPAAAT SPVVLAALAA GATSLGTTIM  780
DEMAYSINGE NTHYGTPTNP CAPGRVPGGS SSGSAVAVAA NLVDFSLGTD TGGSVRVPAA  840
YCGIFGLRPS HGLVSAENVI PMAQMFDTVG WFSRDLSTLS RVTKVLLPLP DDIVKQPTQV  900
TIPMDCFQIL GSLNDRTYQI INASVAKRFD SQIIDNRNLG DFISDNVPSI GKFITDFSES  960
ELPSVPALSV ISHVMRGLQR SQFKANHAEW VNTVKPNLGP GLRERILEAI ASGDNESLED  1020
FQAIRAEFKS ALAALLKDHG ILAIPTVPGP PPKVGMEAAP LENFRARAFS LLSIAGLSGF  1080
CQVSIPLGMR NGLPVSVSLV ARHGADHFLL NVVEELYQTL IDEATKTWSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2dc0_A1e-31724111264425probable amidase
2dc0_B1e-31724111264425probable amidase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116990.0AK111699.1 Oryza sativa Japonica Group cDNA clone:J023009K15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635918.10.0PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(47) synthase
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A0E0GX680.0A0A0E0GX68_ORYNI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGBGIOSGA015793-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103222527